miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|50278172|gb|CR556893.1|CR556893 GCCGGGGGAGGGCGGTGCGGTCGCGGCTGGCGGCAGAAGCGGCCGCAGGGGGTCTGGGCAGGGCTGGGCAGTGCTGCTGG
AGCAAAAGCGGGAGCGGGAGCCGGGCCGCAGCTGGGGCTGGAGACGCCGTCGCAGCCTGAACGGAGTGTGCGACGGATTG
GGAGGTCGGGAACTACAAGCGGACTGTGAAGCGGATCGACGATGGCCACCGCCTGTGCAGCGACCTCATGAACTGCCTGC
ATGAGCGGGCACGCATCGAGAAGGCGTATGCGCAGCAGCTCACTGAGTGGGCCCGGCGCTGGAGGCAGCTCGTGGAGAAG
GGGCCCCAGTATGGGACCGTGGAGAAGGCCTGGATGGCCTTCATGTCCGAGGCAGAGAGGGTGAGCGAGCTGCACCTCGA
GGTGAAGGCCTCACTGATGAACGATGACTTTGAGAAGATCAAGAACTGGCAGAAGGAAGCCTTTCACAAGCAGATGATGG
GCGGCTTCAAGGAGACCAAGG




Most similar to sp|Q9UNF0|PACN2_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LTR2|TGD2_ARATH Protein TRIGALACTOSYLDIACYLGLYCEROL 2,
           chloroplastic OS=Arabidopsis thaliana GN=TGD2 PE=1 SV=1
          Length = 381

 Score =  193 bits (491), Expect(2) = 2e-56
 Identities = 91/134 (67%), Positives = 111/134 (82%)
 Frame = +2

Query: 302 EGGVGLFMVSGXXXXXXXXXXXRGFQLRSRFRKYNTVFEFTQACGICVGTPVRIRGVTVG 481
           EGGVGLF+VSG           RGFQ+RS+FRKY TVFE + A GIC GTPVRIRGVTVG
Sbjct: 96  EGGVGLFIVSGATLLALSWAWLRGFQMRSKFRKYQTVFELSHASGICTGTPVRIRGVTVG 155

Query: 482 SVVRVDSSLRSIDATVEVEDDKIIIPRNSVVEVNQSGLLMETLIDITPKDPLPAPSVGPL 661
           +++RV+ SL++I+A  E+EDDKIIIPRNS+VEVNQSGLLMET+IDI P++P+P PSVGPL
Sbjct: 156 TIIRVNPSLKNIEAVAEIEDDKIIIPRNSLVEVNQSGLLMETMIDIMPRNPIPEPSVGPL 215

Query: 662 DPDCTKEGLILCDK 703
            P+C KEGLI+CD+
Sbjct: 216 HPECGKEGLIVCDR 229



 Score = 47.4 bits (111), Expect(2) = 2e-56
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 102 GFPVLKPR-RTMLLXXXXXXXXXXXXXXXXXNSSTNPLAALVEVPRALWRRTLQPLGDYG 278
           G P L P+ RT  L                 +   NPL  +++VPR +WR+TL+PL D+G
Sbjct: 29  GVPYLPPKPRTRHLVVRAASNSDAAHGQPSSDGGKNPLTVVLDVPRNIWRQTLKPLSDFG 88

Query: 279 FGK 287
           FGK
Sbjct: 89  FGK 91


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9UNF0|PACN2_HUMAN Protein kinase C and casein kinase substrate
           in neurons protein 2 OS=Homo sapiens GN=PACSIN2 PE=1
           SV=2
          Length = 486

 Score =  242 bits (617), Expect = 1e-63
 Identities = 114/114 (100%), Positives = 114/114 (100%)
 Frame = +3

Query: 159 WEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGT 338
           WEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGT
Sbjct: 19  WEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGT 78

Query: 339 VEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETK 500
           VEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETK
Sbjct: 79  VEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETK 132